Evolución y salud: evolución experimental y epidemiología
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University of Basel
Basilea, SuizaPublicaciones en colaboración con investigadores/as de University of Basel (40)
2024
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Redefining the treponemal history through pre-Columbian genomes from Brazil
Nature, Vol. 627, Núm. 8002, pp. 182-188
2021
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Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim
F1000Research, Vol. 10
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Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain h37rv
Microbial Genomics, Vol. 7, Núm. 7
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Phylogenomics of mycobacterium africanum reveals a new lineage and a complex evolutionary history
Microbial Genomics, Vol. 7, Núm. 2, pp. 1-14
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Quantifying transmission fitness costs of multi-drug resistant tuberculosis
Epidemics, Vol. 36
2019
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Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex
Nature Communications, Vol. 10, Núm. 1
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Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex
Science Advances, Vol. 5, Núm. 6
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Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana
PLoS ONE, Vol. 14, Núm. 3
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Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development
PLoS ONE, Vol. 14, Núm. 3
2018
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A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study
The Lancet Infectious Diseases, Vol. 18, Núm. 4, pp. 431-440
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A new phylogenetic framework for the animal-adapted mycobacterium tuberculosis complex
Frontiers in Microbiology, Vol. 9, Núm. NOV
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Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches
Scientific Reports, Vol. 8, Núm. 1
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Treemmer: A tool to reduce large phylogenetic datasets with minimal loss of diversity
BMC Bioinformatics, Vol. 19, Núm. 1
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Tuberculosis outbreak investigation using phylodynamic analysis
Epidemics, Vol. 25, pp. 47-53
2017
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Biological and epidemiological consequences of MTBC diversity
Advances in Experimental Medicine and Biology (Springer New York LLC), pp. 95-116
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Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420
Science, Vol. 355, Núm. 6330, pp. 1206-1211
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Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum
Tuberculosis, Vol. 104, pp. 58-64
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Tuberculosis in Swiss captive Asian elephants: Microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome sequencing
Scientific Reports, Vol. 7, Núm. 1
2016
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Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages
Nature Genetics, Vol. 48, Núm. 12, pp. 1535-1543
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Standard genotyping overestimates transmission of mycobacterium tuberculosis among immigrants in a low-incidence country
Journal of Clinical Microbiology, Vol. 54, Núm. 7, pp. 1862-1870