Publikationen in Zusammenarbeit mit Forschern von University of Basel (40)

2024

  1. Redefining the treponemal history through pre-Columbian genomes from Brazil

    Nature, Vol. 627, Núm. 8002, pp. 182-188

2021

  1. Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim

    F1000Research, Vol. 10

  2. Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain h37rv

    Microbial Genomics, Vol. 7, Núm. 7

  3. Phylogenomics of mycobacterium africanum reveals a new lineage and a complex evolutionary history

    Microbial Genomics, Vol. 7, Núm. 2, pp. 1-14

  4. Quantifying transmission fitness costs of multi-drug resistant tuberculosis

    Epidemics, Vol. 36

2019

  1. Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex

    Nature Communications, Vol. 10, Núm. 1

  2. Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex

    Science Advances, Vol. 5, Núm. 6

  3. Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana

    PLoS ONE, Vol. 14, Núm. 3

  4. Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development

    PLoS ONE, Vol. 14, Núm. 3

2018

  1. A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study

    The Lancet Infectious Diseases, Vol. 18, Núm. 4, pp. 431-440

  2. A new phylogenetic framework for the animal-adapted mycobacterium tuberculosis complex

    Frontiers in Microbiology, Vol. 9, Núm. NOV

  3. Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches

    Scientific Reports, Vol. 8, Núm. 1

  4. Treemmer: A tool to reduce large phylogenetic datasets with minimal loss of diversity

    BMC Bioinformatics, Vol. 19, Núm. 1

  5. Tuberculosis outbreak investigation using phylodynamic analysis

    Epidemics, Vol. 25, pp. 47-53

2017

  1. Biological and epidemiological consequences of MTBC diversity

    Advances in Experimental Medicine and Biology (Springer New York LLC), pp. 95-116

  2. Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420

    Science, Vol. 355, Núm. 6330, pp. 1206-1211

  3. Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum

    Tuberculosis, Vol. 104, pp. 58-64

  4. Tuberculosis in Swiss captive Asian elephants: Microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome sequencing

    Scientific Reports, Vol. 7, Núm. 1

2016

  1. Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

    Nature Genetics, Vol. 48, Núm. 12, pp. 1535-1543

  2. Standard genotyping overestimates transmission of mycobacterium tuberculosis among immigrants in a low-incidence country

    Journal of Clinical Microbiology, Vol. 54, Núm. 7, pp. 1862-1870