Publications by the researcher in collaboration with Sebastián Chávez de Diego (20)

2024

  1. The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

    eLife, Vol. 12

2021

  1. Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

    RNA Biology, Vol. 18, Núm. 9, pp. 1310-1323

2019

  1. Homeostasis in the Central Dogma of molecular biology: the importance of mRNA instability

    RNA Biology, Vol. 16, Núm. 12, pp. 1659-1666

  2. The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4

    Nucleic acids research, Vol. 47, Núm. 18, pp. 9524-9541

2017

  1. Asymmetric cell division requires specific mechanisms for adjusting global transcription

    Nucleic Acids Research, Vol. 45, Núm. 21, pp. 12401-12412

  2. Corrigendum to “External conditions inversely change the RNA polymerase II elongation rate and density in yeast” [Biochim. Biophys. Acta (2013) 1829(11) (1248–1255)] (S1874939913001417)(10.1016/j.bbagrm.2013.09.008)

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms

  3. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning

    Epigenetics & chromatin, Vol. 10, Núm. 1, pp. 58

2016

  1. Growth rate controls mRNA turnover in steady and non-steady states

    RNA Biology, Vol. 13, Núm. 12, pp. 1175-1181

  2. The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons

    Nucleic Acids Research, Vol. 44, Núm. 8, pp. 3643-3658

  3. The importance of controlling mRNA turnover during cell proliferation

    Current Genetics, Vol. 62, Núm. 4, pp. 701-710

2015

  1. Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle

    Nucleic Acids Research, Vol. 43, Núm. 2, pp. 787-802

2014

  1. Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast

    Frontiers in Genetics, Vol. 5, Núm. FEB

2013

  1. Eukaryotic mRNA decay: Methodologies, pathways, and links to other stages of gene expression

    Journal of Molecular Biology, Vol. 425, Núm. 20, pp. 3750-3775

  2. External conditions inversely change the RNA polymerase II elongation rate and density in yeast

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1829, Núm. 11, pp. 1248-1255

2012

  1. The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast

    Transcription, Vol. 3, Núm. 1, pp. 39-44

2010

  1. The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors

    Nucleic Acids Research, Vol. 38, Núm. 14, pp. 4651-4664

2009

  1. Regulon-specific control of transcription elongation across the yeast genome

    PLoS Genetics, Vol. 5, Núm. 8

2006

  1. A gene-specific requirement for FACT during transcription is related to the chromatin organization of the transcribed region

    Molecular and Cellular Biology, Vol. 26, Núm. 23, pp. 8710-8721

  2. Protein interactions within the Set1 complex and their roles in the regulation of histone 3 lysine 4 methylation

    Journal of Biological Chemistry, Vol. 281, Núm. 46, pp. 35404-35412

  3. Structural Characterization of Set1 RNA Recognition Motifs and their Role in Histone H3 Lysine 4 Methylation

    Journal of Molecular Biology, Vol. 359, Núm. 5, pp. 1170-1181