Publications (139) JOSE ENRIQUE PEREZ ORTIN publications

2025

  1. Measurement of rRNA Synthesis and Degradation Rates by 3H-Uracil Labeling in Yeast

    Methods in molecular biology (Clifton, N.J.), Vol. 2863, pp. 183-204

2024

  1. Comparison of Xrn1 and Rat1 5′ → 3′ exoribonucleases in budding yeast supports the specific role of Xrn1 in cotranslational mRNA decay

    Yeast, Vol. 41, Núm. 7, pp. 458-472

  2. Influence of cell volume on the gene transcription rate

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1867, Núm. 1

  3. The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

    eLife, Vol. 12

2023

  1. Enhanced gene regulation by cooperation between mRNA decay and gene transcription

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1866, Núm. 2

2022

  1. A feedback mechanism controls rDNA copy number evolution in yeast independently of natural selection

    PloS one, Vol. 17, Núm. 9, pp. e0272878

  2. Changes in mRNA stability play an important role in the adaptation of yeast cells to iron deprivation

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1865, Núm. 2

  3. High-Resolution Deep Sequencing of Nascent Transcription in Yeast with BioGRO-seq

    Methods in molecular biology (Clifton, N.J.), Vol. 2477, pp. 57-70

  4. Nucleo-cytoplasmic shuttling of RNA-binding factors: mRNA buffering and beyond

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1865, Núm. 5

  5. RNA-controlled nucleocytoplasmic shuttling of mRNA decay factors regulates mRNA synthesis and a novel mRNA decay pathway

    Nature Communications, Vol. 13, Núm. 1

2021

  1. A Trans-Omics Comparison Reveals Common Gene Expression Strategies in Four Model Organisms and Exposes Similarities and Differences between Them

    Cells, Vol. 10, Núm. 2

  2. Cell volume homeostatically controls the rDNA repeat copy number and rRNA synthesis rate in yeast

    PLoS Genetics, Vol. 17, Núm. 4

  3. Eukaryotic RNA Polymerases: The Many Ways to Transcribe a Gene

    Frontiers in Molecular Biosciences, Vol. 8

  4. Recruitment of Xrn1 to stress-induced genes allows efficient transcription by controlling RNA polymerase II backtracking

    RNA Biology, Vol. 18, Núm. 10, pp. 1458-1474

  5. Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast

    RNA Biology, Vol. 18, Núm. 8, pp. 1206-1220

  6. The total mRNA concentration buffering system in yeast is global rather than gene-specific

    RNA, Vol. 27, Núm. 10, pp. 1281-1290

  7. Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

    RNA Biology, Vol. 18, Núm. 9, pp. 1310-1323

2019

  1. A genome-wide transcriptional study reveals that iron deficiency inhibits the yeast TORC1 pathway

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1862, Núm. 9

  2. Homeostasis in the Central Dogma of molecular biology: the importance of mRNA instability

    RNA Biology, Vol. 16, Núm. 12, pp. 1659-1666

  3. Measuring RNA polymerase activity genome-wide with high-resolution run-on-based methods

    Methods, Vol. 159-160, pp. 177-182