Publicaciones en las que colabora con Mario Alí Fares Riaño (20)

2021

  1. The role of ancestral duplicated genes in adaptation to growth on lactate, a non-fermentable carbon source for the yeast saccharomyces cerevisiae

    International Journal of Molecular Sciences, Vol. 22, Núm. 22

2020

  1. Transcriptional rewiring, adaptation, and the role of gene duplication in the metabolism of ethanol of saccharomyces cerevisiae

    mSystems, Vol. 5, Núm. 4

2017

  1. Chance and necessity in the genome evolution of endosymbiotic bacteria of insects

    ISME Journal, Vol. 11, Núm. 6, pp. 1291-1304

  2. Expression properties exhibit correlated patterns with the fate of duplicated genes, their divergence, and transcriptional plasticity in Saccharomycotina

    DNA Research, Vol. 24, Núm. 6, pp. 559-570

  3. Genome mutational and transcriptional hotspots are traps for duplicated genes and sources of adaptations

    Genome Biology and Evolution, Vol. 9, Núm. 5, pp. 1229-1240

  4. The phenotypic plasticity of duplicated genes in Saccharomyces cerevisiae and the origin of adaptations

    G3: Genes, Genomes, Genetics, Vol. 7, Núm. 1, pp. 63-75

2016

  1. Essentiality is a strong determinant of protein rates of evolution during mutation accumulation experiments in Escherichia coli

    Genome Biology and Evolution, Vol. 8, Núm. 9, pp. 2914-2927

2015

  1. Fitness trade-offs determine the role of the molecular chaperonin GroEL in buffering mutations

    Molecular Biology and Evolution, Vol. 32, Núm. 10, pp. 2681-2693

2014

  1. Inferring functional divergence in protein sequences

    Natural Selection: Methods and Applications (CRC Press), pp. 83-111

  2. Preservation of genetic and regulatory robustness in ancient gene duplicates of Saccharomyces cerevisiae

    Genome Research, Vol. 24, Núm. 11, pp. 1830-1841

2013

  1. The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes

    PLoS Genetics, Vol. 9, Núm. 1

2012

  1. Proteome-wide analysis of functional divergence in bacteria: Exploring a host of ecological adaptations

    PLoS ONE, Vol. 7, Núm. 4

2010

  1. Structural Calibration of the rates of amino acid evolution in a search for Darwin in drifting biological systems

    Molecular Biology and Evolution, Vol. 27, Núm. 10, pp. 2375-2385

  2. Two chaperonin systems in bacterial genomes with distinct ecological roles

    Trends in Genetics

2009

  1. Computational biology methods and their application to the comparative genomics of endocellular symbiotic bacteria of insects

    Biological Procedures Online, Vol. 11, Núm. 1, pp. 52-78

  2. Genome-Wide Functional Divergence after the Symbiosis of Proteobacteria with Insects Unraveled through a Novel Computational Approach

    PLoS Computational Biology, Vol. 5, Núm. 4

  3. Phylogenomic inference of functional divergence

    BMC Bioinformatics, Vol. 10, Núm. SUPPL. 13

  4. Selection for translational robustness in Buchnera aphidicola, endosymbiotic bacteria of aphids

    Molecular Biology and Evolution, Vol. 26, Núm. 4, pp. 743-751

2008

  1. The evolution of the flagellar assembly pathway in endosymbiotic bacterial genomes

    Molecular Biology and Evolution, Vol. 25, Núm. 9, pp. 2069-2076

2006

  1. GRAST: A new way of genome reduction analysis using comparative genomics

    Bioinformatics, Vol. 22, Núm. 13, pp. 1551-1561