Publications in collaboration with researchers from Universidad de Sevilla (18)

2024

  1. Influence of cell volume on the gene transcription rate

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1867, Núm. 1

2021

  1. Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

    RNA Biology, Vol. 18, Núm. 9, pp. 1310-1323

2019

  1. The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4

    Nucleic acids research, Vol. 47, Núm. 18, pp. 9524-9541

2017

  1. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning

    Epigenetics & chromatin, Vol. 10, Núm. 1, pp. 58

  2. The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation

    Nucleic Acids Research, Vol. 45, Núm. 16, pp. 9302-9318

2016

  1. The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons

    Nucleic Acids Research, Vol. 44, Núm. 8, pp. 3643-3658

  2. The importance of controlling mRNA turnover during cell proliferation

    Current Genetics, Vol. 62, Núm. 4, pp. 701-710

2013

  1. Eukaryotic mRNA decay: Methodologies, pathways, and links to other stages of gene expression

    Journal of Molecular Biology, Vol. 425, Núm. 20, pp. 3750-3775

  2. What do you mean by transcription rate?: The conceptual difference between nascent transcription rate and mRNA synthesis rate is essential for the proper understanding of transcriptomic analyses Insights & Perspectives J. E. Pérez-Ortín et al.

    BioEssays, Vol. 35, Núm. 12, pp. 1056-1062

  3. XGene expression is circular: Factors for mRNA degradation also foster mRNA synthesis

    Cell, Vol. 153, Núm. 5, pp. 1000

2012

  1. Genome-wide studies of mRNA synthesis and degradation in eukaryotes

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1819, Núm. 6, pp. 604-615

  2. The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast

    Transcription, Vol. 3, Núm. 1, pp. 39-44

2010

  1. A complete set of nascent transcription rates for yeast genes

    PLoS ONE, Vol. 5, Núm. 11

  2. The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors

    Nucleic Acids Research, Vol. 38, Núm. 14, pp. 4651-4664

2009

  1. Regulon-specific control of transcription elongation across the yeast genome

    PLoS Genetics, Vol. 5, Núm. 8

2006

  1. A gene-specific requirement for FACT during transcription is related to the chromatin organization of the transcribed region

    Molecular and Cellular Biology, Vol. 26, Núm. 23, pp. 8710-8721

  2. Protein interactions within the Set1 complex and their roles in the regulation of histone 3 lysine 4 methylation

    Journal of Biological Chemistry, Vol. 281, Núm. 46, pp. 35404-35412

  3. Structural Characterization of Set1 RNA Recognition Motifs and their Role in Histone H3 Lysine 4 Methylation

    Journal of Molecular Biology, Vol. 359, Núm. 5, pp. 1170-1181